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DNA Tools

by donutbrew ALL

A lightweight Sublime Text plugin for manipulating DNA sequences directly in the editor.

Details

Installs

  • Total 14
  • Win 6
  • Mac 6
  • Linux 2
Jan 13 Jan 12 Jan 11 Jan 10 Jan 9 Jan 8 Jan 7 Jan 6 Jan 5 Jan 4 Jan 3 Jan 2 Jan 1 Dec 31 Dec 30 Dec 29 Dec 28 Dec 27 Dec 26 Dec 25 Dec 24 Dec 23 Dec 22 Dec 21 Dec 20 Dec 19 Dec 18 Dec 17 Dec 16 Dec 15 Dec 14 Dec 13 Dec 12 Dec 11 Dec 10 Dec 9 Dec 8 Dec 7 Dec 6 Dec 5 Dec 4 Dec 3 Dec 2 Dec 1 Nov 30
Windows 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mac 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0
Linux 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Readme

Source
raw.​githubusercontent.​com

DNA Tools for Sublime Text

A lightweight Sublime Text ¾ plugin for manipulating DNA sequences directly in the editor. Includes support for IUPAC ambiguity codes.

Somehow it seems this doesn't yet exist, and I frequently wish it did. So here we are. If there are more tools I need, I'll add them.

Features

  • Reverse Complement: Reverses and complements selected DNA sequences
  • Complement Only: Applies IUPAC complement rules without reversing
  • Reverse Only: Simply reverses the selected text

Supports both uppercase and lowercase bases, including ambiguous bases like R, Y, W, S, N, etc.

IUPAC Complement Rules

Base Complement
A T
T A
C G
G C
R Y
Y R
S S
W W
K M
M K
B V
D H
H D
V B
N N

Installation

Manual Install

  1. Open Preferences → Browse Packages…
  2. Clone this repo into the User/ directory:
git clone https://github.com/donutbrew/sublime-dna-tools.git "DNA Tools"


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## Usage

Highlight any DNA sequence in your Sublime editor, then:

### Command Palette

Press `Ctrl+Shift+P` / `Cmd+Shift+P` and type:

- `DNA Tools: Reverse Complement`
- `DNA Tools: Complement Only`
- `DNA Tools: Reverse Only`

### Optional Keybindings

To bind to hotkeys, open `Preferences > Key Bindings` and add:

```json
[
  { "keys": ["ctrl+alt+r"], "command": "reverse_complement" },
  { "keys": ["ctrl+alt+c"], "command": "complement_only" },
  { "keys": ["ctrl+alt+e"], "command": "reverse_only" }
]