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DNA Tools

by donutbrew ALL

A lightweight Sublime Text plugin for manipulating DNA sequences directly in the editor.

Details

Installs

  • Total 8
  • Win 6
  • Mac 1
  • Linux 1
Nov 2 Nov 1 Oct 31 Oct 30 Oct 29 Oct 28 Oct 27 Oct 26 Oct 25 Oct 24 Oct 23 Oct 22 Oct 21 Oct 20 Oct 19 Oct 18 Oct 17 Oct 16 Oct 15 Oct 14 Oct 13 Oct 12 Oct 11 Oct 10 Oct 9 Oct 8 Oct 7 Oct 6 Oct 5 Oct 4 Oct 3 Oct 2 Oct 1 Sep 30 Sep 29 Sep 28 Sep 27 Sep 26 Sep 25 Sep 24 Sep 23 Sep 22 Sep 21 Sep 20 Sep 19
Windows 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
Mac 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
Linux 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Readme

Source
raw.​githubusercontent.​com

DNA Tools for Sublime Text

A lightweight Sublime Text ¾ plugin for manipulating DNA sequences directly in the editor. Includes support for IUPAC ambiguity codes.

Somehow it seems this doesn't yet exist, and I frequently wish it did. So here we are. If there are more tools I need, I'll add them.

Features

  • Reverse Complement: Reverses and complements selected DNA sequences
  • Complement Only: Applies IUPAC complement rules without reversing
  • Reverse Only: Simply reverses the selected text

Supports both uppercase and lowercase bases, including ambiguous bases like R, Y, W, S, N, etc.

IUPAC Complement Rules

Base Complement
A T
T A
C G
G C
R Y
Y R
S S
W W
K M
M K
B V
D H
H D
V B
N N

Installation

Manual Install

  1. Open Preferences → Browse Packages…
  2. Clone this repo into the User/ directory:
git clone https://github.com/donutbrew/sublime-dna-tools.git "DNA Tools"


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## Usage

Highlight any DNA sequence in your Sublime editor, then:

### Command Palette

Press `Ctrl+Shift+P` / `Cmd+Shift+P` and type:

- `DNA Tools: Reverse Complement`
- `DNA Tools: Complement Only`
- `DNA Tools: Reverse Only`

### Optional Keybindings

To bind to hotkeys, open `Preferences > Key Bindings` and add:

```json
[
  { "keys": ["ctrl+alt+r"], "command": "reverse_complement" },
  { "keys": ["ctrl+alt+c"], "command": "complement_only" },
  { "keys": ["ctrl+alt+e"], "command": "reverse_only" }
]