DNA Tools
A lightweight Sublime Text plugin for manipulating DNA sequences directly in the editor.
Details
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Readme
- Source
- raw.githubusercontent.com
DNA Tools for Sublime Text
A lightweight Sublime Text ¾ plugin for manipulating DNA sequences directly in the editor. Includes support for IUPAC ambiguity codes.
Somehow it seems this doesn't yet exist, and I frequently wish it did. So here we are. If there are more tools I need, I'll add them.
Features
- Reverse Complement: Reverses and complements selected DNA sequences
- Complement Only: Applies IUPAC complement rules without reversing
- Reverse Only: Simply reverses the selected text
Supports both uppercase and lowercase bases, including ambiguous bases like R
, Y
, W
, S
, N
, etc.
IUPAC Complement Rules
Base | Complement |
---|---|
A | T |
T | A |
C | G |
G | C |
R | Y |
Y | R |
S | S |
W | W |
K | M |
M | K |
B | V |
D | H |
H | D |
V | B |
N | N |
Installation
Manual Install
- Open
Preferences → Browse Packages…
- Clone this repo into the
User/
directory:
git clone https://github.com/donutbrew/sublime-dna-tools.git "DNA Tools"
---
## Usage
Highlight any DNA sequence in your Sublime editor, then:
### Command Palette
Press `Ctrl+Shift+P` / `Cmd+Shift+P` and type:
- `DNA Tools: Reverse Complement`
- `DNA Tools: Complement Only`
- `DNA Tools: Reverse Only`
### Optional Keybindings
To bind to hotkeys, open `Preferences > Key Bindings` and add:
```json
[
{ "keys": ["ctrl+alt+r"], "command": "reverse_complement" },
{ "keys": ["ctrl+alt+c"], "command": "complement_only" },
{ "keys": ["ctrl+alt+e"], "command": "reverse_only" }
]