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ACTG

by hackerfriendly ST2/ST3

ACTG: Nucleotide syntax highlighting

Details

Installs

  • Total 2K
  • Win 1K
  • OS X 373
  • Linux 232
May 26 May 25 May 24 May 23 May 22 May 21 May 20 May 19 May 18 May 17 May 16 May 15 May 14 May 13 May 12 May 11 May 10 May 9 May 8 May 7 May 6 May 5 May 4 May 3 May 2 May 1 Apr 30 Apr 29 Apr 28 Apr 27 Apr 26 Apr 25 Apr 24 Apr 23 Apr 22 Apr 21 Apr 20 Apr 19 Apr 18 Apr 17 Apr 16 Apr 15 Apr 14 Apr 13 Apr 12
Windows 0 0 1 1 1 0 0 1 1 2 0 0 0 0 1 1 1 0 0 2 1 2 1 1 2 0 1 1 0 0 1 1 1 1 1 0 4 1 1 0 0 0 2 0 0
OS X 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1
Linux 0 1 1 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Readme

Source
raw.​githubusercontent.​com

ACTG for SublimeText

Nucleotide syntax highlighting and reverse complement support. This is handy for “stare at the screen and squint” DNA analysis.

Features

  • Choose 'Nucleotides' syntax highlighting to colorize ACTG and N.
  • Automatically associates .fa, .fasta, .fq, .fastq, .sam, and .vcf files.
  • Make a selection and hit Control-Shift-R (or Command-Shift-R on Mac) to replace it with the reverse complement.

Bugs

  • ACTG and N are simply highlighted in place, which can make for some interestingly colored VCF comments and quality strings. A more clever regex would help, if only I could fathom the tmLanguage backreference match syntax.

Patches welcome.

Releases

  • 0.0.1: Initial release, 2014-09-29

Thanks

Developed at Spiral Genetics, http://www.spiralgenetics.com/