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ACTG

by hackerfriendly ST2/ST3

ACTG: Nucleotide syntax highlighting

Labels language syntax

Details

Installs

  • Total 2K
  • Win 1K
  • OS X 423
  • Linux 248
Feb 16 Feb 15 Feb 14 Feb 13 Feb 12 Feb 11 Feb 10 Feb 9 Feb 8 Feb 7 Feb 6 Feb 5 Feb 4 Feb 3 Feb 2 Feb 1 Jan 31 Jan 30 Jan 29 Jan 28 Jan 27 Jan 26 Jan 25 Jan 24 Jan 23 Jan 22 Jan 21 Jan 20 Jan 19 Jan 18 Jan 17 Jan 16 Jan 15 Jan 14 Jan 13 Jan 12 Jan 11 Jan 10 Jan 9 Jan 8 Jan 7 Jan 6 Jan 5 Jan 4 Jan 3
Windows 0 1 1 2 0 0 1 1 0 2 0 0 0 0 0 1 0 1 1 0 0 0 0 1 2 2 0 0 0 0 1 2 0 2 0 0 0 0 2 2 1 0 0 1 0
OS X 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
Linux 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Readme

Source
raw.​githubusercontent.​com

ACTG for SublimeText

Nucleotide syntax highlighting and reverse complement support. This is handy for “stare at the screen and squint” DNA analysis.

Features

  • Choose 'Nucleotides' syntax highlighting to colorize ACTG and N.
  • Automatically associates .fa, .fasta, .fq, .fastq, .sam, and .vcf files.
  • Make a selection and hit Control-Shift-R (or Command-Shift-R on Mac) to replace it with the reverse complement.

Bugs

  • ACTG and N are simply highlighted in place, which can make for some interestingly colored VCF comments and quality strings. A more clever regex would help, if only I could fathom the tmLanguage backreference match syntax.

Patches welcome.

Releases

  • 0.0.1: Initial release, 2014-09-29

Thanks

Developed at Spiral Genetics, http://www.spiralgenetics.com/