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ACTG

by hackerfriendly ST2/ST3

ACTG: Nucleotide syntax highlighting

Details

Installs

  • Total 1K
  • Win 958
  • OS X 311
  • Linux 187
Oct 18 Oct 17 Oct 16 Oct 15 Oct 14 Oct 13 Oct 12 Oct 11 Oct 10 Oct 9 Oct 8 Oct 7 Oct 6 Oct 5 Oct 4 Oct 3 Oct 2 Oct 1 Sep 30 Sep 29 Sep 28 Sep 27 Sep 26 Sep 25 Sep 24 Sep 23 Sep 22 Sep 21 Sep 20 Sep 19 Sep 18 Sep 17 Sep 16 Sep 15 Sep 14 Sep 13 Sep 12 Sep 11 Sep 10 Sep 9 Sep 8 Sep 7 Sep 6 Sep 5 Sep 4
Windows 0 1 0 1 2 1 2 0 1 3 0 1 0 0 0 4 1 0 0 2 0 1 2 0 2 1 1 0 4 2 3 4 0 2 1 1 1 0 0 1 1 0 3 2 2
OS X 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0
Linux 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0

Readme

Source
raw.​githubusercontent.​com

ACTG for SublimeText

Nucleotide syntax highlighting and reverse complement support. This is handy for “stare at the screen and squint” DNA analysis.

Features

  • Choose 'Nucleotides' syntax highlighting to colorize ACTG and N.
  • Automatically associates .fa, .fasta, .fq, .fastq, .sam, and .vcf files.
  • Make a selection and hit Control-Shift-R (or Command-Shift-R on Mac) to replace it with the reverse complement.

Bugs

  • ACTG and N are simply highlighted in place, which can make for some interestingly colored VCF comments and quality strings. A more clever regex would help, if only I could fathom the tmLanguage backreference match syntax.

Patches welcome.

Releases

  • 0.0.1: Initial release, 2014-09-29

Thanks

Developed at Spiral Genetics, http://www.spiralgenetics.com/