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ACTG

by hackerfriendly ALL

ACTG: Nucleotide syntax highlighting

Labels language syntax

Details

Installs

  • Total 3K
  • Win 2K
  • Mac 580
  • Linux 360
Dec 9 Dec 8 Dec 7 Dec 6 Dec 5 Dec 4 Dec 3 Dec 2 Dec 1 Nov 30 Nov 29 Nov 28 Nov 27 Nov 26 Nov 25 Nov 24 Nov 23 Nov 22 Nov 21 Nov 20 Nov 19 Nov 18 Nov 17 Nov 16 Nov 15 Nov 14 Nov 13 Nov 12 Nov 11 Nov 10 Nov 9 Nov 8 Nov 7 Nov 6 Nov 5 Nov 4 Nov 3 Nov 2 Nov 1 Oct 31 Oct 30 Oct 29 Oct 28 Oct 27 Oct 26
Windows 1 2 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0
Mac 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
Linux 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Readme

Source
raw.​githubusercontent.​com

ACTG for SublimeText

Nucleotide syntax highlighting and reverse complement support. This is handy for “stare at the screen and squint” DNA analysis.

Features

  • Choose 'Nucleotides' syntax highlighting to colorize ACTG and N.
  • Automatically associates .fa, .fasta, .fq, .fastq, .sam, and .vcf files.
  • Make a selection and hit Control-Shift-R (or Command-Shift-R on Mac) to replace it with the reverse complement.

Bugs

  • ACTG and N are simply highlighted in place, which can make for some interestingly colored VCF comments and quality strings. A more clever regex would help, if only I could fathom the tmLanguage backreference match syntax.

Patches welcome.

Releases

  • 0.0.1: Initial release, 2014-09-29

Thanks

Developed at Spiral Genetics, http://www.spiralgenetics.com/