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ACTG

by hackerfriendly ALL

ACTG: Nucleotide syntax highlighting

Labels language syntax

Details

  • 0.0.1
  • github.​com
  • github.​com
  • 11 years ago
  • 21 minutes ago
  • 11 years ago

Installs

  • Total 3K
  • Win 2K
  • Mac 637
  • Linux 397
Jul 6 Jul 5 Jul 4 Jul 3 Jul 2 Jul 1 Jun 30 Jun 29 Jun 28 Jun 27 Jun 26 Jun 25 Jun 24 Jun 23 Jun 22 Jun 21 Jun 20 Jun 19 Jun 18 Jun 17 Jun 16 Jun 15 Jun 14 Jun 13 Jun 12 Jun 11 Jun 10 Jun 9 Jun 8 Jun 7 Jun 6 Jun 5 Jun 4 Jun 3 Jun 2 Jun 1 May 31 May 30 May 29 May 28 May 27 May 26 May 25 May 24 May 23
Windows 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0
Mac 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1
Linux 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Readme

Source
raw.​githubusercontent.​com

ACTG for SublimeText

Nucleotide syntax highlighting and reverse complement support. This is handy for “stare at the screen and squint” DNA analysis.

Features

  • Choose 'Nucleotides' syntax highlighting to colorize ACTG and N.
  • Automatically associates .fa, .fasta, .fq, .fastq, .sam, and .vcf files.
  • Make a selection and hit Control-Shift-R (or Command-Shift-R on Mac) to replace it with the reverse complement.

Bugs

  • ACTG and N are simply highlighted in place, which can make for some interestingly colored VCF comments and quality strings. A more clever regex would help, if only I could fathom the tmLanguage backreference match syntax.

Patches welcome.

Releases

  • 0.0.1: Initial release, 2014-09-29

Thanks

Developed at Spiral Genetics, http://www.spiralgenetics.com/