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bio​Syntax

by bioSyntax ST3

Syntax highlighting for computational biology. [ Sublime submodule ]

Details

Installs

  • Total 160
  • Win 68
  • OS X 53
  • Linux 39
Aug 15 Aug 14 Aug 13 Aug 12 Aug 11 Aug 10 Aug 9 Aug 8 Aug 7 Aug 6 Aug 5 Aug 4 Aug 3 Aug 2 Aug 1 Jul 31 Jul 30 Jul 29 Jul 28 Jul 27 Jul 26 Jul 25 Jul 24 Jul 23 Jul 22 Jul 21 Jul 20 Jul 19 Jul 18 Jul 17 Jul 16 Jul 15 Jul 14 Jul 13 Jul 12 Jul 11 Jul 10 Jul 9 Jul 8 Jul 7 Jul 6 Jul 5 Jul 4 Jul 3 Jul 2
Windows 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 3 0 0 1 0 0 0 1 0 0 0
OS X 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 2 1 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
Linux 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0

Readme

Source
raw.​githubusercontent.​com

bioSyntax LogoFasta Banner

Syntax highlighting for computational biology to bring you intuitively close to your data.

Support in vim, less, sublime3 & gedit for .sam, .flagstat, .vcf, .fasta, .fastq, .faidx, .clustal, .pdb, .gtf, .bed files & more.

bioSyntax.org

We'd like to know how bioSyntax can be developed to help your workflow. Tell us what you think! (~5m)

Mozilla Sprint 2018 Updates

  • Find out how you can contribute!
  • Date: May 10 - May 11 (9:00 am - 5:00 pm PST)
  • On-Site Location: Mozilla Vancouver, #209-163 W Hastings St, Vancouver, BC V6B 1H5, Canada (NOTE: No on-site parking available)
  • Join us for the pre-Sprint Demo Call on Tuesday, May 8, 16:00 UTC to learn more about the project!

CONTACT: - Project Lead: Alyssa Fegen (alyssafegen at alumni.ubc.ca); will be on-site - Slack Channel (NOTE: Invite link expires on May 13; contact dev team for invites subsequently) - Discord Server (NOTE: Invite link expires on May 13; contact dev team for invites subsequently)

Usage

bioSyntax integrates seamlessly with your text editor, recognizing data-type by the file extension or streamed into less.

To gain the most insight from your data, read our brief bioSyntax Manual.

Download Latest Release

Install

Screenshots

samtools view -h NA19238.bam | sam-less - sam-less


Code of Conduct

This project is participating in the Mozilla Festival 2018, and as such, respects Mozilla's community participation guidelines. This serves as a guideline for the behaviour of all participants, remote or local, as well as project leads, facilitators, staff, volunteers, vendors, and anyone else involved in making the Mozilla Global Sprint possible.

Collaborate

Dev Team: Artem Babaian | Anicet Ebou | Alyssa Fegen | Jeffrey Kam | Gherman Novakovskiy | Li Yao | Jasper Wong

Contact us: info[AT]biosyntax.org

A hackseq17 Initiative.