nextflow
Nextflow workflow syntax highlighting and snippets for Sublime Text 3
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sublime-nextflow: Nextflow workflow syntax highlighting and snippets for Sublime Text 3
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Nextflow Syntax Highlighting
Nextflow syntax highlighting extends Sublime Text 3's Groovy syntax with highlighting of:
- processes
- input/output/script tags
- channel highlighting based on matching
ch_*
- some invalid syntax checks (into channel in input tag and from channel in output tag)
- highlighting special Nextflow functions and variables (workflow, params, task, etc)
Nextflow Snippets
proc
: process snippettag
: tag directive snippetpub
: publishDir directive snippetinit
: initialize a Nextflow workflow (shebang, some initial params and a help message)illumina
: Illumina paired-end reads file pairs channelpar
: Create a new params parameter (params.<param_name> = <default>
)cpus
: insert “${task.cpus}” into a scriptscript_path
: specify user script (e.g. Python script) to use fromscripts/
directory in workflow base directoryinfo
:log.info
snippetdone
: on workflow complete or error message